Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917317.1_cds_XP_016466924.1_59729
CDS Infomation

[gene=LOC107789600] [db_xref=GeneID:107789600] [protein=pre-mRNA-processing factor 39] [protein_id=XP_016466924.1] [location=join(18838..19264,19761..19864,20990..21219,21837..22004,22309..22654,23125..23268,24440..24592,24686..24802,25395..25475,25576..25725,26960..27256,27805..27918,30093..30200)] [gbkey=CDS]
Sequence

ATGGGCGATAGTGAAACTGCGGTAGCTCAAACCTCGTCAGTCACTGACTATAAATCTGCT
GGTTATTCATCAAAAGTTCCTGATGATGCTGGCACCCATACTTCTTCTGATGCCGGAAAT
GCTGGGGATTTGGCCACTCCATGTCCAAATGGCGCTGGGGAGTTAGCATCTTCTAATGTA
GAAGCTGGAAACCTATATACCACTGATGCAGTGTCTACCCAGCAAGAAAGTGCTACTGCT
ATGACATATGAGGCCAGCCAGGATCTTGCAGCTCTAGAAGATGCAGCTGCAGGTTCATCC
CAAGCTGCTGTTTATGACTCTTCTGCAAATGGCAACAACAATACTGAAGCAAGAGACATT
GCTGAAAATGGGATTGCATCAGATGTTCATGGAAATTCCAATATGCATCAGCCAGAAGAC
GGCTTAGCTTTATCTCCTGAAGAGGAAAGATTATGGAGCATAGTAAGGACAAATTCTTTG
GACTTTAATGCCTGGACTTCCCTTATTGAGGAGACGGAGAAGATGTCAGAGGGCAACATT
TTGAAGATTCGGAAGGTTTATGATGCATTCTTGGCAGAATTTCCTCTATGTTACGGTTAT
TGGAAGAAATATGCAGATCATGAGACACGTCTTGGCTCTGTTGACAAAGTTGTGGAGGTC
TATGAACGAGCTGTTCAAGGCGTGACATATTCGGTAGATATGTGGTTGCACTATTGTGTT
TTTGCTATAAGCACTTATGGAGATCCTGACACCATTAGAAGGTTATTTGAAAGAGGATTA
GTGTATGTTGGAACAGACTACCTGTCTTTTCCACTTTGGGATAAGTACCTGGAGTACGAG
TACACGCAGCAGGCTTGGTCAAATGTTGCTGCCATATACACACAGATATTGCAGAATCCA
AATCAGCAGCTCGATCGCTATTTTGAAGGTTTTAAGGAGCTGGTGGCTAGTAGGCCTCTA
TCAGAGCTACGAACTCCTGAAGAAGCTGCAGCTGCAGCAGAAGCTGGCAGTGAACAGATT
GAGGGAGAGGTTAATTCTAGTTCCGAGCCTTCTAAACCTGTAAGTGCAAGCTTAAAAGAT
GCCGAGGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAG
TTCGATTCTAAGATCATTGGTTTTGAAACAGCTATAAGGAGGCCATACTTTCACGTGCGG
CCTCTTAATGTTGCAGAGCTTGAAAATTGGAACAATTATCTTGACTTCATAGAAGGAGGA
GATGACTTCAATAAGGTGGTCAAGCTGTATGAGAGATGTCTGATTGCTTGTGCCAATTAT
CCTGAATTTTGGATTCGGTATGTTTCGTGTATGGAAACAAGTGGAAGTTTGGATCTTGCC
GATAATGCCCTTGCTCGTGCCACTCAAGTCTTTGTCAAGAGACAACCAGAGATTCACCTT
TTTGCTGCTCGATTGCGGGAGCAACGTGGTGATATACCTGGTGCTCAGGCTGCGTATCAA
CTTGTGCATGCTGAAATATCACCTGGACTTGTAGAAGCAATAATCAAGCATGCGAACATG
GAACGTCGACTTGGGAACCTTGAGGATGCCTGTTCCGTATATGAACAAGCTATCGCCATT
GAAAAAGGAAAGGAGCACTCGCTGAGTCTGCCATTATTGCTTGCACAGTACTCTCGGTTT
TTGTACTTGGTTTCTGGGAAGGTGGAAAAAGCTCGGGAAATTCTTGATCAAGCAGTTGAG
AATGTCCAGTTGTCAAAACCACTTCTGGAGGCACTGATCCATTTAGAATCCATTCAGTCG
CTACCAAAGAGAATAGATTTGTTGGATTCATTGGTTGATAAGTTCATAGTTCCATCTCCC
GAGAACCCTAGCGTTGCAAGTGTTGATGAAAGAGAGGAATTATCAAGCATTTTCTTGGAG
TTTCTAGATCTTTTCGGAGATGCAGCATCAATTAAGAAGGCTGATGATCGGCACGCTAAG
CTTTTTTTACGCCATAGAACCTCTTCAGATTCAAAGAAACGTCAGGCTGACGATTATTTA
GTTTCTGAGAAGACAAAGCTGGCAAAGTCTGCAGTTGCAGCATCTAACCCCTCAGTGGCT
GGTGCATTTCCTGGAGCGCAAAATCAATGGCCTGCAGGTTATGGTGTACAAGGTCAAACC
TGGCCACAGGCTGCGCAAGCCCAACCGCAGCAGTGGAATCCTGGTTATGCGCAACAGGCA
GCATATGGTGCTTACAGCAGTTACGGCGCCAGCTATGCACCTCCTCAAGCGCCTGCACCA
GTGCCCTCGAGTGCCGGTTATGGTGCTTATCCTTCAACATACCCGGCGCAGGCCTTCCCT
CAGCAGAATTATGCACAGCCAGCCGCCGCTCCCACTTTGCCTCCAGCACCACAAGCTACA
ACTGTTCCTCCTACAGCTTATTATGGCAGTTATTATTGA

Peptide Sequence

PEP ID

XP_016466924.1
PEP Infomation

PREDICTED: pre-mRNA-processing factor 39 [Nicotiana tabacum]
Sequence

MGDSETAVAQTSSVTDYKSAGYSSKVPDDAGTHTSSDAGNAGDLATPCPNGAGELASSNV
EAGNLYTTDAVSTQQESATAMTYEASQDLAALEDAAAGSSQAAVYDSSANGNNNTEARDI
AENGIASDVHGNSNMHQPEDGLALSPEEERLWSIVRTNSLDFNAWTSLIEETEKMSEGNI
LKIRKVYDAFLAEFPLCYGYWKKYADHETRLGSVDKVVEVYERAVQGVTYSVDMWLHYCV
FAISTYGDPDTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQILQNP
NQQLDRYFEGFKELVASRPLSELRTPEEAAAAAEAGSEQIEGEVNSSSEPSKPVSASLKD
AEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVAELENWNNYLDFIEGG
DDFNKVVKLYERCLIACANYPEFWIRYVSCMETSGSLDLADNALARATQVFVKRQPEIHL
FAARLREQRGDIPGAQAAYQLVHAEISPGLVEAIIKHANMERRLGNLEDACSVYEQAIAI
EKGKEHSLSLPLLLAQYSRFLYLVSGKVEKAREILDQAVENVQLSKPLLEALIHLESIQS
LPKRIDLLDSLVDKFIVPSPENPSVASVDEREELSSIFLEFLDLFGDAASIKKADDRHAK
LFLRHRTSSDSKKRQADDYLVSEKTKLAKSAVAASNPSVAGAFPGAQNQWPAGYGVQGQT
WPQAAQAQPQQWNPGYAQQAAYGAYSSYGASYAPPQAPAPVPSSAGYGAYPSTYPAQAFP
QQNYAQPAAAPTLPPAPQATTVPPTAYYGSYY

Transcript Sequence

Gene sequence data has not been registered.